STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alaS_2alanyl-tRNA synthetase. (211 aa)    
Predicted Functional Partners:
Lgra_0077
Hypothetical protein.
 
     0.849
Lgra_0078
YbaK / prolyl-tRNA synthetases associated domain protein.
       0.842
Lgra_1830
Diphosphomevalonate decarboxylase.
    
   0.795
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.656
ydcN
DNA-binding transcriptional regulator.
 
     0.618
Lgra_0080
Hypothetical protein.
       0.606
Lgra_0088
N-acetyltransferase GCN5.
 
     0.542
Lgra_0082
GNAT family acetyltransferase.
 
     0.520
Lgra_0089
Putative aminoglycoside phosphotransferase.
 
     0.508
Lgra_0086
N-acetyltransferase GCN5.
 
     0.486
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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