Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycgGRegulatory protein (EAL domain). (529 aa)    
Predicted Functional Partners:
gmr_5
Sensory box/GGDEF family protein.
 0.986
ycdT
Diguanylate kinase.
 0.911
pleD_2
Regulatory protein (GGDEF domain).
 
 
 0.907
dosC_1
Regulatory protein (GGDEF, PAS, PAC domains).
 
 0.900
yeaP
Diguanylate kinase.
 0.882
adrA
Components of sensory transduction system.
  
 
  0.852
gmr_2
Sensory box/GGDEF domain protein.
 
 
 
 0.840
pleD
Sensor histidine kinase.
  
 
 0.816
ydeH
Regulatory protein (GGDEF, PAS, PAC domains).
  
 
 0.816
csrD
Two component histidine kinase.
  
 
  0.810
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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