STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ahlDZn-dependent hydrolase GumP. (281 aa)    
Predicted Functional Partners:
Lgra_0421
Coenzyme F390 synthetase FtsA.
 
     0.961
Lgra_0423
3-beta hydroxysteroid dehydrogenase/isomerase.
     0.949
moeZ_1
Thiazole biosynthesis adenylyltransferase ThiF.
  
 0.902
fabH_5
3-oxoacyl-ACP synthase.
 
  
 0.878
Lgra_2992
Hypothetical protein.
 
   
 0.629
Lgra_0128
Putative secreted esterase.
  
   
 0.620
pksM
Polyketide synthase.
 
 
 0.606
oprM_4
Outer membrane efflux protein.
       0.577
traI_2
Putative conjugative transfer protein TraI.
  
     0.574
Lgra_0037
Putative conjugative transfer protein TrbB.
  
 
  0.566
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.