Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_0460Hypothetical protein. (239 aa)    
Predicted Functional Partners:
Lgra_2054
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.790
pksM
Polyketide synthase.
 
 
 0.763
Lgra_0950
Hypothetical protein.
  
     0.759
Lgra_1288
Protein kinase.
  
     0.754
Lgra_0092
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.723
hemG
Protoporphyrinogen oxidase.
  
  
  0.723
traI_2
Putative conjugative transfer protein TraI.
  
     0.721
Lgra_0128
Putative secreted esterase.
  
     0.700
pdhB_2
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
 0.690
aacA-aphD
Aminoglycoside 6'-N-acetyltransferase.
  
     0.675
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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