STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AlpAProphage CP4-57 regulatory protein (AlpA). (86 aa)    
Predicted Functional Partners:
Lgra_0476
Inner membrane protein.
 
    0.832
traC_2
5' DNA primase TraC.
       0.793
Lgra_0478
Hypothetical protein.
       0.793
Lgra_0475
Hypothetical protein.
       0.792
Lgra_0474
Hypothetical protein.
       0.761
intA_2
Integrase; Belongs to the 'phage' integrase family.
 
  
 0.661
Lgra_2054
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.598
Lgra_0480
Hypothetical protein.
       0.546
pta
Phosphate acetyl/butaryl transferase.
     
  0.514
Lgra_2589
Inner membrane protein.
 
    0.419
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.