STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_0573Cytokinin oxidase. (458 aa)    
Predicted Functional Partners:
Lgra_0572
Hypothetical protein.
 
     0.931
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.845
etfA
Electron transfer flavoprotein, alpha subunit.
 
 0.732
etfB
Electron transfer flavoprotein beta-subunit (Beta-ETF).
 
 0.702
pdhB_2
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
    
 0.683
kmo_1
Kynurenine 3-monooxygenase.
  
    0.663
Lgra_2860
Pyruvate phosphate dikinase.
 
  
  0.659
Lgra_1677
Putative Acetyltransferase, GNAT family.
 
 
  0.639
Lgra_2054
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.607
fni
Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.597
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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