STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nsrR_1Rrf2 family transporter protein. (153 aa)    
Predicted Functional Partners:
nifU
NifU family FeS assembly SUF system protein.
  
  
 0.993
iscS
Cysteine desulfurase.
  
 
 0.978
sufD
Component of SufBCD complex.
 
   
 0.884
sufB
Cysteine desulfurase.
 
   
 0.879
sufC
Component of SufBCD complex, ATP-binding component of ABC superfamily.
     
 0.861
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.842
sufA
Fe-S cluster assembly protein; Belongs to the HesB/IscA family.
  
  
 0.747
nsrR
DNA-binding transcriptional regulator.
  
   
 0.736
poxA
lysyl-tRNA synthetase.
 
     0.736
Lgra_0596
Metal-sulfur cluster biosynthetic enzyme.
     
 0.736
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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