Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lgra_0604IcmF. (973 aa)    
Predicted Functional Partners:
Lgra_0603
IcmH (DotU).
 
 
 0.986
dotG
IcmE/DotG protein.
 
   
 0.871
dotC
Defect in organelle trafficking lipoprotein DotC.
  
   
 0.832
icmV
Intracellular multiplication protein IcmV.
      
 0.797
icmX
Intracellular multiplication protein IcmX.
      
 0.786
yggR_1
DotB.
      
 0.766
cpxR_1
Transcriptional regulatory protein CpxR.
      
 0.756
lvrA_1
Legionella vir region protein.
  
     0.738
ydgA
Putative membrane protein YdgA-like protein.
  
     0.736
ubiC
4-hydroxybenzoate synthetase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
  
     0.731
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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