Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arcB_1 | bvgS | Lgra_1983 | Lgra_1355 | Response regulator. | Sensory box histidine kinase/response regulator. | 0.999 |
arcB_1 | cheA | Lgra_1983 | Lgra_1441 | Response regulator. | Chemotaxis histidine kinase. | 0.987 |
arcB_1 | cph1_1 | Lgra_1983 | Lgra_0611 | Response regulator. | Two-component sensor histidine kinase. | 0.965 |
arcB_1 | cyaB | Lgra_1983 | Lgra_1439 | Response regulator. | Guanylate/adenylate cyclase. | 0.987 |
arcB_1 | divK | Lgra_1983 | Lgra_1520 | Response regulator. | Polar-differentiation response regulator DivK. | 0.982 |
arcB_1 | evgS | Lgra_1983 | Lgra_0609 | Response regulator. | Sensory box histidine kinase/response regulator. | 0.999 |
arcB_1 | gmr_2 | Lgra_1983 | Lgra_2031 | Response regulator. | Sensory box/GGDEF domain protein. | 0.953 |
arcB_1 | gmr_4 | Lgra_1983 | Lgra_1243 | Response regulator. | Hypothetical protein. | 0.988 |
arcB_1 | luxQ | Lgra_1983 | Lgra_0853 | Response regulator. | Sensor histidine kinase. | 0.999 |
arcB_1 | spo0F | Lgra_1983 | Lgra_1242 | Response regulator. | Hypothetical protein. | 0.988 |
bvgS | arcB_1 | Lgra_1355 | Lgra_1983 | Sensory box histidine kinase/response regulator. | Response regulator. | 0.999 |
bvgS | cheA | Lgra_1355 | Lgra_1441 | Sensory box histidine kinase/response regulator. | Chemotaxis histidine kinase. | 0.999 |
bvgS | cph1_1 | Lgra_1355 | Lgra_0611 | Sensory box histidine kinase/response regulator. | Two-component sensor histidine kinase. | 0.999 |
bvgS | cyaB | Lgra_1355 | Lgra_1439 | Sensory box histidine kinase/response regulator. | Guanylate/adenylate cyclase. | 0.999 |
bvgS | divK | Lgra_1355 | Lgra_1520 | Sensory box histidine kinase/response regulator. | Polar-differentiation response regulator DivK. | 0.999 |
bvgS | evgS | Lgra_1355 | Lgra_0609 | Sensory box histidine kinase/response regulator. | Sensory box histidine kinase/response regulator. | 0.999 |
bvgS | gmr_2 | Lgra_1355 | Lgra_2031 | Sensory box histidine kinase/response regulator. | Sensory box/GGDEF domain protein. | 0.999 |
bvgS | gmr_4 | Lgra_1355 | Lgra_1243 | Sensory box histidine kinase/response regulator. | Hypothetical protein. | 0.999 |
bvgS | luxQ | Lgra_1355 | Lgra_0853 | Sensory box histidine kinase/response regulator. | Sensor histidine kinase. | 0.999 |
bvgS | spo0F | Lgra_1355 | Lgra_1242 | Sensory box histidine kinase/response regulator. | Hypothetical protein. | 0.999 |
page 1 of 6