Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0651 | coq7 | Lgra_0651 | Lgra_1182 | Alpha/beta superfamily transporter hydrolase. | Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. | 0.464 |
Lgra_0651 | panB | Lgra_0651 | Lgra_0652 | Alpha/beta superfamily transporter hydrolase. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.408 |
Lgra_0651 | sidG | Lgra_0651 | Lgra_0649 | Alpha/beta superfamily transporter hydrolase. | SidG protein, substrate of the Dot/Icm system. | 0.423 |
Lgra_0651 | yhcM | Lgra_0651 | Lgra_0650 | Alpha/beta superfamily transporter hydrolase. | ATPase. | 0.819 |
coq7 | Lgra_0651 | Lgra_1182 | Lgra_0651 | Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. | Alpha/beta superfamily transporter hydrolase. | 0.464 |
panB | Lgra_0651 | Lgra_0652 | Lgra_0651 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | Alpha/beta superfamily transporter hydrolase. | 0.408 |
panB | yhcM | Lgra_0652 | Lgra_0650 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | ATPase. | 0.408 |
sidG | Lgra_0651 | Lgra_0649 | Lgra_0651 | SidG protein, substrate of the Dot/Icm system. | Alpha/beta superfamily transporter hydrolase. | 0.423 |
sidG | yhcM | Lgra_0649 | Lgra_0650 | SidG protein, substrate of the Dot/Icm system. | ATPase. | 0.423 |
yhcM | Lgra_0651 | Lgra_0650 | Lgra_0651 | ATPase. | Alpha/beta superfamily transporter hydrolase. | 0.819 |
yhcM | panB | Lgra_0650 | Lgra_0652 | ATPase. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.408 |
yhcM | sidG | Lgra_0650 | Lgra_0649 | ATPase. | SidG protein, substrate of the Dot/Icm system. | 0.423 |