STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_0664CMP-N-acetylneuraminate monooxygenase. (531 aa)    
Predicted Functional Partners:
xylA
Xylene monooxygenase.
 
  
 0.792
moeZ_1
Thiazole biosynthesis adenylyltransferase ThiF.
  
 
 0.760
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 0.739
Lgra_2860
Pyruvate phosphate dikinase.
 
  
 0.709
hmp
Oxidoreductase, FAD-binding protein.
  
 
 0.681
fadH
2,4-dienoyl-CoA reductase.
    
 0.673
Lgra_2195
acyl-CoA synthetase.
 
  
 0.667
Lgra_0544
Polyketide synthase.
 
  
 0.601
Lgra_0572
Hypothetical protein.
  
     0.590
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
   
   0.543
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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