Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0310 | gatA_2 | Lgra_0310 | Lgra_0309 | Amidase. | Amidase. | 0.869 |
Lgra_0310 | ptpA_2 | Lgra_0310 | Lgra_0736 | Amidase. | Prolyl oligopeptidase. | 0.414 |
Lgra_1982 | ptpA | Lgra_1982 | Lgra_1772 | Putative Heparan-alpha-glucosaminide N-acetyltransferase. | Prolyl tripeptidyl peptidase precursor. | 0.629 |
Lgra_1982 | ptpA_2 | Lgra_1982 | Lgra_0736 | Putative Heparan-alpha-glucosaminide N-acetyltransferase. | Prolyl oligopeptidase. | 0.418 |
Lgra_2281 | ptpA_2 | Lgra_2281 | Lgra_0736 | GNAT family acetyltransferase. | Prolyl oligopeptidase. | 0.519 |
Lgra_2500 | per1 | Lgra_2500 | Lgra_2531 | D-alanyl-D-alanine carboxypeptidase. | Beta-lactamase. | 0.450 |
Lgra_2500 | ptpA | Lgra_2500 | Lgra_1772 | D-alanyl-D-alanine carboxypeptidase. | Prolyl tripeptidyl peptidase precursor. | 0.435 |
Lgra_2500 | ptpA_2 | Lgra_2500 | Lgra_0736 | D-alanyl-D-alanine carboxypeptidase. | Prolyl oligopeptidase. | 0.512 |
cdd | ptpA_2 | Lgra_0294 | Lgra_0736 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Prolyl oligopeptidase. | 0.422 |
gatA_2 | Lgra_0310 | Lgra_0309 | Lgra_0310 | Amidase. | Amidase. | 0.869 |
gatA_2 | ptpA_2 | Lgra_0309 | Lgra_0736 | Amidase. | Prolyl oligopeptidase. | 0.472 |
per1 | Lgra_2500 | Lgra_2531 | Lgra_2500 | Beta-lactamase. | D-alanyl-D-alanine carboxypeptidase. | 0.450 |
per1 | ptpA | Lgra_2531 | Lgra_1772 | Beta-lactamase. | Prolyl tripeptidyl peptidase precursor. | 0.416 |
per1 | ptpA_2 | Lgra_2531 | Lgra_0736 | Beta-lactamase. | Prolyl oligopeptidase. | 0.484 |
ptpA | Lgra_1982 | Lgra_1772 | Lgra_1982 | Prolyl tripeptidyl peptidase precursor. | Putative Heparan-alpha-glucosaminide N-acetyltransferase. | 0.629 |
ptpA | Lgra_2500 | Lgra_1772 | Lgra_2500 | Prolyl tripeptidyl peptidase precursor. | D-alanyl-D-alanine carboxypeptidase. | 0.435 |
ptpA | per1 | Lgra_1772 | Lgra_2531 | Prolyl tripeptidyl peptidase precursor. | Beta-lactamase. | 0.416 |
ptpA | ptpA_2 | Lgra_1772 | Lgra_0736 | Prolyl tripeptidyl peptidase precursor. | Prolyl oligopeptidase. | 0.746 |
ptpA_2 | Lgra_0310 | Lgra_0736 | Lgra_0310 | Prolyl oligopeptidase. | Amidase. | 0.414 |
ptpA_2 | Lgra_1982 | Lgra_0736 | Lgra_1982 | Prolyl oligopeptidase. | Putative Heparan-alpha-glucosaminide N-acetyltransferase. | 0.418 |
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