STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_0762Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (485 aa)    
Predicted Functional Partners:
dprE1_2
Oxidoreductase.
 
  
 0.977
Lgra_0760
Oxidoreductase.
 
     0.947
dprE1_1
Hypothetical protein.
 
  
 0.903
Lgra_1718
Hypothetical protein.
 
     0.776
Lgra_0759
Transmembrane protein.
 
     0.714
pds
15-cis-phytoene desaturase.
 
     0.703
Lgra_0755
GtrA-like protein.
 
     0.694
atpD
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
  0.687
atpD_1
ATP synthase F0F1 subunit beta.
    
  0.687
rffG
3-beta hydroxysteroid dehydrogenase/isomerase.
 
  
  0.675
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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