STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_0809LysM domain-containing protein. (345 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 
 0.964
pilO
Tfp pilus assembly protein PilO.
  
   0.883
pilN
Tfp pilus assembly protein PilN.
  
 
   0.882
pilM
Tfp pilus assembly protein, ATPase PilM.
  
 
   0.880
smf
Protein smf.
       0.842
Lgra_0811
Hypothetical protein.
       0.842
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
    0.779
pilP
Tfp pilus assembly protein PilP.
  
     0.773
fimV_1
FimV protein.
  
   
 0.754
pilE_1
Type-IV pilin.
  
     0.754
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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