Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0825 | hoxH | Lgra_0825 | Lgra_0822 | Hydrogenase subunit. | Coenzyme F420-reducing hydrogenase, alpha subunit. | 0.983 |
Lgra_0825 | hoxY | Lgra_0825 | Lgra_0823 | Hydrogenase subunit. | Sulfhydrogenase subunit delta. | 0.980 |
Lgra_0825 | hydG | Lgra_0825 | Lgra_0824 | Hydrogenase subunit. | Hydrogenase/sulfur reductase gamma subunit. | 0.996 |
Lgra_0825 | hypA | Lgra_0825 | Lgra_0831 | Hydrogenase subunit. | Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.795 |
Lgra_0825 | hypB | Lgra_0825 | Lgra_0830 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypB. | 0.812 |
Lgra_0825 | hypC | Lgra_0825 | Lgra_0828 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypC. | 0.795 |
Lgra_0825 | hypD | Lgra_0825 | Lgra_0827 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypD; Belongs to the HypD family. | 0.817 |
Lgra_0825 | hypE | Lgra_0825 | Lgra_0826 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypE. | 0.824 |
Lgra_0825 | hypF | Lgra_0825 | Lgra_0829 | Hydrogenase subunit. | Hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. | 0.818 |
Lgra_0825 | vhtD | Lgra_0825 | Lgra_0821 | Hydrogenase subunit. | Hydrogenase expression/formation protein. | 0.958 |
hoxH | Lgra_0825 | Lgra_0822 | Lgra_0825 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase subunit. | 0.983 |
hoxH | hoxY | Lgra_0822 | Lgra_0823 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Sulfhydrogenase subunit delta. | 0.998 |
hoxH | hydG | Lgra_0822 | Lgra_0824 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase/sulfur reductase gamma subunit. | 0.975 |
hoxH | hypA | Lgra_0822 | Lgra_0831 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.804 |
hoxH | hypB | Lgra_0822 | Lgra_0830 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypB. | 0.814 |
hoxH | hypC | Lgra_0822 | Lgra_0828 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypC. | 0.835 |
hoxH | hypD | Lgra_0822 | Lgra_0827 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypD; Belongs to the HypD family. | 0.871 |
hoxH | hypE | Lgra_0822 | Lgra_0826 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypE. | 0.877 |
hoxH | hypF | Lgra_0822 | Lgra_0829 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. | 0.881 |
hoxH | vhtD | Lgra_0822 | Lgra_0821 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein. | 0.961 |
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