Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nixAHigh-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family. (226 aa)    
Predicted Functional Partners:
hypB
Hydrogenase expression/formation protein HypB.
     
 0.861
hypA
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
     
 0.861
vhtD
Hydrogenase expression/formation protein.
       0.842
hoxH
Coenzyme F420-reducing hydrogenase, alpha subunit.
       0.842
hoxY
Sulfhydrogenase subunit delta.
       0.842
Lgra_0825
Hydrogenase subunit.
       0.842
hypE
Hydrogenase expression/formation protein HypE.
       0.842
hypD
Hydrogenase expression/formation protein HypD; Belongs to the HypD family.
       0.842
hypC
Hydrogenase expression/formation protein HypC.
       0.842
hypF
Hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
       0.842
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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