Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lgra_0834Ribose-phosphate pyrophosphokinase. (88 aa)    
Predicted Functional Partners:
pdp_2
Thymidine/pyrimidine-nucleoside phosphorylase.
 
  
  0.957
Lgra_1804
Thymidine phosphorylase.
 
  
  0.820
pdp_1
Thymidine phosphorylase.
 
  
  0.818
Lgra_0836
Metallo-beta-lactamase.
 
     0.813
copA_3
Cation transport ATPase.
       0.773
pdhB_2
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
   
 0.731
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
 0.693
cpxA_3
Sensor histidine kinase.
   
  0.658
odpB
Pyruvate dehydrogenase E1 subunit beta.
   
 0.657
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
  
 0.648
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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