Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cefDAminotransferase class-V. (400 aa)    
Predicted Functional Partners:
nifU
NifU family FeS assembly SUF system protein.
 
 
 0.955
Lgra_2427
Putative iron-sulpher cluster proteins NifU.
  
 
 0.923
sufC
Component of SufBCD complex, ATP-binding component of ABC superfamily.
 
  
 0.918
sufB
Cysteine desulfurase.
 
 
 0.858
sufD
Component of SufBCD complex.
 
 
 0.855
Lgra_2775
Endonuclease/exonuclease/phosphatase family protein.
    
   0.743
kmo_2
Kynurenine 3-monooxygenase.
    
  0.712
moeZ_1
Thiazole biosynthesis adenylyltransferase ThiF.
  
 
 0.675
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.624
Lgra_0845
NAD dependent epimerase/dehydratase.
       0.474
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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