STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yiaV_2Hemolysin D. (336 aa)    
Predicted Functional Partners:
ttgC_1
Outer membrane efflux protein.
 
   0.839
Lgra_0858
Phage minor tail protein.
       0.773
Lgra_0859
Hypothetical protein.
       0.773
emrB
Multidrug efflux system protein; Belongs to the major facilitator superfamily.
  
   0.770
emrB_1
Multidrug resistance protein, MFS superfamily.
  
   0.740
lmxE
Efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.587
oprM_2
Outer membrane efflux protein.
  
   0.529
Lgra_2824
Putative esterase with patatin domain protein.
  
     0.515
oprM_3
Outer membrane efflux protein.
  
   0.512
hsrA_2
Transporter of the major facilitator superfamily (MFS).
  
   0.507
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.