Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0882 | Lgra_0883 | Lgra_0882 | Lgra_0883 | Hypothetical protein. | Chromate transport protein. | 0.615 |
Lgra_0882 | fadE_1 | Lgra_0882 | Lgra_0881 | Hypothetical protein. | Acyl coenzyme A dehydrogenase. | 0.592 |
Lgra_0882 | ppk | Lgra_0882 | Lgra_0884 | Hypothetical protein. | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.554 |
Lgra_0883 | Lgra_0882 | Lgra_0883 | Lgra_0882 | Chromate transport protein. | Hypothetical protein. | 0.615 |
Lgra_0883 | fadE_1 | Lgra_0883 | Lgra_0881 | Chromate transport protein. | Acyl coenzyme A dehydrogenase. | 0.478 |
Lgra_0883 | ppk | Lgra_0883 | Lgra_0884 | Chromate transport protein. | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.708 |
evgS | ppk | Lgra_0609 | Lgra_0884 | Sensory box histidine kinase/response regulator. | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.436 |
fadE_1 | Lgra_0882 | Lgra_0881 | Lgra_0882 | Acyl coenzyme A dehydrogenase. | Hypothetical protein. | 0.592 |
fadE_1 | Lgra_0883 | Lgra_0881 | Lgra_0883 | Acyl coenzyme A dehydrogenase. | Chromate transport protein. | 0.478 |
fadE_1 | ppk | Lgra_0881 | Lgra_0884 | Acyl coenzyme A dehydrogenase. | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.437 |
polA | ppk | Lgra_1421 | Lgra_0884 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.528 |
ppa | ppaX | Lgra_0978 | Lgra_2407 | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | HAD-superfamily hydrolase. | 0.498 |
ppa | ppk | Lgra_0978 | Lgra_0884 | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.671 |
ppaX | ppa | Lgra_2407 | Lgra_0978 | HAD-superfamily hydrolase. | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | 0.498 |
ppaX | ppk | Lgra_2407 | Lgra_0884 | HAD-superfamily hydrolase. | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.454 |
ppk | Lgra_0882 | Lgra_0884 | Lgra_0882 | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | Hypothetical protein. | 0.554 |
ppk | Lgra_0883 | Lgra_0884 | Lgra_0883 | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | Chromate transport protein. | 0.708 |
ppk | evgS | Lgra_0884 | Lgra_0609 | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | Sensory box histidine kinase/response regulator. | 0.436 |
ppk | fadE_1 | Lgra_0884 | Lgra_0881 | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | Acyl coenzyme A dehydrogenase. | 0.437 |
ppk | polA | Lgra_0884 | Lgra_1421 | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.528 |
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