STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macA_1Hemolysin D. (278 aa)    
Predicted Functional Partners:
ybhS
ABC transporter permease.
 
  
 0.956
ybhF
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
 
  
 0.954
oprM_6
Outer membrane efflux protein.
  
   0.843
yhhJ
ABC transporter permease.
 
  
 0.805
rbbA
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
 
  
 0.735
Lgra_0160
HlyD family secretion protein.
  
     0.705
tolC
Outer membrane protein TolC.
 
 
 0.510
Lgra_0898
Transmembrane protein.
       0.490
apxIB_1
Toxin secretion ATP binding protein.
   
  0.475
apxIB_2
ABC transporter.
   
  0.475
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.