hit protein (Legionella gratiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

hit

Histidine triad (HIT) protein. (140 aa)

Predicted Functional Partners:

puuA

0.731

glnA

0.731

Lgra_0905

0.620

lysS

0.540

Lgra_0906

0.535

udk_1

0.482

udk_2

0.482

bcp

0.455

btuE

0.401

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgra_0905	Lgra_0906	Lgra_0905	Lgra_0906	2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.	Prolyl oligopeptidase; Belongs to the UPF0255 family.	0.661
Lgra_0905	hit	Lgra_0905	Lgra_0904	2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.	Histidine triad (HIT) protein.	0.620
Lgra_0906	Lgra_0905	Lgra_0906	Lgra_0905	Prolyl oligopeptidase; Belongs to the UPF0255 family.	2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.	0.661
Lgra_0906	hit	Lgra_0906	Lgra_0904	Prolyl oligopeptidase; Belongs to the UPF0255 family.	Histidine triad (HIT) protein.	0.535
bcp	hit	Lgra_2732	Lgra_0904	Acetylpolyamine aminohydrolase.	Histidine triad (HIT) protein.	0.455
bcp	udk_1	Lgra_2732	Lgra_1278	Acetylpolyamine aminohydrolase.	Uridine kinase.	0.507
bcp	udk_2	Lgra_2732	Lgra_1646	Acetylpolyamine aminohydrolase.	Uridine kinase.	0.507
btuE	hit	Lgra_0903	Lgra_0904	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Histidine triad (HIT) protein.	0.401
glnA	hit	Lgra_3233	Lgra_0904	Glutamine synthetase.	Histidine triad (HIT) protein.	0.731
glnA	puuA	Lgra_3233	Lgra_1703	Glutamine synthetase.	Glutamine synthase; Belongs to the glutamine synthetase family.	0.875
hit	Lgra_0905	Lgra_0904	Lgra_0905	Histidine triad (HIT) protein.	2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.	0.620
hit	Lgra_0906	Lgra_0904	Lgra_0906	Histidine triad (HIT) protein.	Prolyl oligopeptidase; Belongs to the UPF0255 family.	0.535
hit	bcp	Lgra_0904	Lgra_2732	Histidine triad (HIT) protein.	Acetylpolyamine aminohydrolase.	0.455
hit	btuE	Lgra_0904	Lgra_0903	Histidine triad (HIT) protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.401
hit	glnA	Lgra_0904	Lgra_3233	Histidine triad (HIT) protein.	Glutamine synthetase.	0.731
hit	lysS	Lgra_0904	Lgra_1725	Histidine triad (HIT) protein.	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	0.540
hit	puuA	Lgra_0904	Lgra_1703	Histidine triad (HIT) protein.	Glutamine synthase; Belongs to the glutamine synthetase family.	0.731
hit	udk_1	Lgra_0904	Lgra_1278	Histidine triad (HIT) protein.	Uridine kinase.	0.482
hit	udk_2	Lgra_0904	Lgra_1646	Histidine triad (HIT) protein.	Uridine kinase.	0.482
lysS	hit	Lgra_1725	Lgra_0904	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	Histidine triad (HIT) protein.	0.540