Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lgra_0906Prolyl oligopeptidase; Belongs to the UPF0255 family. (394 aa)    
Predicted Functional Partners:
Lgra_2482
Pyoverdine biosynthesis protein.
  
     0.707
Lgra_1714
5-carboxyvanillate decarboxylase.
  
     0.668
Lgra_0905
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.661
thi
Thiamine biosynthesis protein NMT-1.
  
     0.622
Lgra_1516
Pyoverdine biosynthesis protein PvcA.
  
     0.547
hit
Histidine triad (HIT) protein.
       0.535
Lgra_1914
Hypothetical protein.
  
     0.518
oatA_2
Acetyltransferase.
       0.509
hemG
Protoporphyrinogen oxidase.
  
    0.418
Lgra_2500
D-alanyl-D-alanine carboxypeptidase.
  
     0.413
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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