STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtxA-2Structural toxin protein RtxA. (318 aa)    
Predicted Functional Partners:
Lgra_1900
Hypothetical protein; Belongs to the UPF0276 family.
   
    0.580
rtxA2
Structural toxin protein RtxA.
   
  0.565
Lgra_2272
Hypothetical protein.
   
  0.565
guaA
GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
  0.560
Lgra_0956
Hypothetical protein.
       0.533
Lgra_0352
Signal peptide protein.
   
    0.522
Lgra_2215
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.470
tolC
Outer membrane protein TolC.
  
  
 0.461
apxIB_1
Toxin secretion ATP binding protein.
  
  
 0.438
apxIB_2
ABC transporter.
  
  
 0.438
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.