Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_1019 | cadA_1 | Lgra_1019 | Lgra_1018 | Double zinc ribbon. | Zinc, cobalt and lead efflux system. | 0.773 |
Lgra_1019 | czrA | Lgra_1019 | Lgra_1020 | Double zinc ribbon. | ArsR family transcriptional regulator. | 0.773 |
birA | czrA | Lgra_1845 | Lgra_1020 | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | ArsR family transcriptional regulator. | 0.413 |
cadA_1 | Lgra_1019 | Lgra_1018 | Lgra_1019 | Zinc, cobalt and lead efflux system. | Double zinc ribbon. | 0.773 |
cadA_1 | czrA | Lgra_1018 | Lgra_1020 | Zinc, cobalt and lead efflux system. | ArsR family transcriptional regulator. | 0.806 |
czrA | Lgra_1019 | Lgra_1020 | Lgra_1019 | ArsR family transcriptional regulator. | Double zinc ribbon. | 0.773 |
czrA | birA | Lgra_1020 | Lgra_1845 | ArsR family transcriptional regulator. | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.413 |
czrA | cadA_1 | Lgra_1020 | Lgra_1018 | ArsR family transcriptional regulator. | Zinc, cobalt and lead efflux system. | 0.806 |