rna protein (Legionella gratiana) - STRING interaction network

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second shell of interactors

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rna

Ribonuclease T2 family protein; Belongs to the RNase T2 family. (253 aa)

Predicted Functional Partners:

rpsF

0.745

rpsR

0.745

rplI

0.745

rpsA

0.745

rpsL_1

0.745

rpsL_2

0.745

rpsJ

0.745

rplC

0.745

rplD

0.745

rplW

0.745

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rna	rplC	Lgra_1069	Lgra_0369	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.745
rna	rplD	Lgra_1069	Lgra_0370	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.745
rna	rplI	Lgra_1069	Lgra_0265	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.745
rna	rplW	Lgra_1069	Lgra_0371	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.745
rna	rpsA	Lgra_1069	Lgra_0278	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.745
rna	rpsF	Lgra_1069	Lgra_0262	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.745
rna	rpsJ	Lgra_1069	Lgra_0368	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.745
rna	rpsL_1	Lgra_1069	Lgra_0364	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.745
rna	rpsL_2	Lgra_1069	Lgra_0365	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.745
rna	rpsR	Lgra_1069	Lgra_0263	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.745
rplC	rna	Lgra_0369	Lgra_1069	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	0.745
rplC	rplD	Lgra_0369	Lgra_0370	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplI	Lgra_0369	Lgra_0265	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.995
rplC	rplW	Lgra_0369	Lgra_0371	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpsA	Lgra_0369	Lgra_0278	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.991
rplC	rpsF	Lgra_0369	Lgra_0262	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.997
rplC	rpsJ	Lgra_0369	Lgra_0368	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplC	rpsL_1	Lgra_0369	Lgra_0364	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rplC	rpsL_2	Lgra_0369	Lgra_0365	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rplC	rpsR	Lgra_0369	Lgra_0263	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.997