rnfB protein (Legionella gratiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rnfB

Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (203 aa)

Predicted Functional Partners:

nth

0.888

Lgra_2054

0.883

metG

0.881

Lgra_1077

0.703

Lgra_1073

0.682

pasI

0.657

nuoE

0.598

lolA

0.578

bacD_2

0.560

hmp

0.551

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgra_1073	metG	Lgra_1073	Lgra_1074	Transmembrane protein.	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.682
Lgra_1073	nth	Lgra_1073	Lgra_1076	Transmembrane protein.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.682
Lgra_1073	rnfB	Lgra_1073	Lgra_1075	Transmembrane protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.682
Lgra_1077	metG	Lgra_1077	Lgra_1074	Hypothetical protein.	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.703
Lgra_1077	nth	Lgra_1077	Lgra_1076	Hypothetical protein.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.703
Lgra_1077	rnfB	Lgra_1077	Lgra_1075	Hypothetical protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.703
Lgra_2054	bacD_2	Lgra_2054	Lgra_0922	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein.	0.636
Lgra_2054	hmp	Lgra_2054	Lgra_3086	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	Oxidoreductase, FAD-binding protein.	0.493
Lgra_2054	nuoE	Lgra_2054	Lgra_0997	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	NADH dehydrogenase I chain E.	0.597
Lgra_2054	rnfB	Lgra_2054	Lgra_1075	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.883
bacD_2	Lgra_2054	Lgra_0922	Lgra_2054	Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	0.636
bacD_2	rnfB	Lgra_0922	Lgra_1075	Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.560
hmp	Lgra_2054	Lgra_3086	Lgra_2054	Oxidoreductase, FAD-binding protein.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	0.493
hmp	nuoE	Lgra_3086	Lgra_0997	Oxidoreductase, FAD-binding protein.	NADH dehydrogenase I chain E.	0.816
hmp	rnfB	Lgra_3086	Lgra_1075	Oxidoreductase, FAD-binding protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.551
lolA	rnfB	Lgra_2549	Lgra_1075	Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.578
metG	Lgra_1073	Lgra_1074	Lgra_1073	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	Transmembrane protein.	0.682
metG	Lgra_1077	Lgra_1074	Lgra_1077	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	Hypothetical protein.	0.703
metG	nth	Lgra_1074	Lgra_1076	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.	0.896
metG	rnfB	Lgra_1074	Lgra_1075	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.881

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About