Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0544 | Lgra_1150 | Lgra_0544 | Lgra_1150 | Polyketide synthase. | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | 0.734 |
Lgra_0544 | Lgra_1551 | Lgra_0544 | Lgra_1551 | Polyketide synthase. | Saframycin Mx1 synthetase B. | 0.999 |
Lgra_0544 | Lgra_2195 | Lgra_0544 | Lgra_2195 | Polyketide synthase. | acyl-CoA synthetase. | 0.999 |
Lgra_0544 | lgrB_2 | Lgra_0544 | Lgra_1497 | Polyketide synthase. | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.998 |
Lgra_0544 | pksJ_1 | Lgra_0544 | Lgra_1874 | Polyketide synthase. | Polyketide synthase, type I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.999 |
Lgra_0544 | pksJ_2 | Lgra_0544 | Lgra_1354 | Polyketide synthase. | Polyketide synthase module; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.999 |
Lgra_0544 | pksM | Lgra_0544 | Lgra_1928 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Lgra_0544 | ptlI | Lgra_0544 | Lgra_0519 | Polyketide synthase. | Pentalenene oxygenase. | 0.999 |
Lgra_0544 | tycC_1 | Lgra_0544 | Lgra_0545 | Polyketide synthase. | Non-ribosomal peptide synthase. | 0.999 |
Lgra_1150 | Lgra_0544 | Lgra_1150 | Lgra_0544 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Polyketide synthase. | 0.734 |
Lgra_1150 | Lgra_1551 | Lgra_1150 | Lgra_1551 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Saframycin Mx1 synthetase B. | 0.642 |
Lgra_1150 | Lgra_2195 | Lgra_1150 | Lgra_2195 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | acyl-CoA synthetase. | 0.692 |
Lgra_1150 | lgrB_2 | Lgra_1150 | Lgra_1497 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.672 |
Lgra_1150 | pksJ_1 | Lgra_1150 | Lgra_1874 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Polyketide synthase, type I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.716 |
Lgra_1150 | pksJ_2 | Lgra_1150 | Lgra_1354 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Polyketide synthase module; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.714 |
Lgra_1150 | pksM | Lgra_1150 | Lgra_1928 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Polyketide synthase. | 0.667 |
Lgra_1150 | pntAA | Lgra_1150 | Lgra_1151 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | NAD(P) transhydrogenase subunit alpha. | 0.792 |
Lgra_1150 | ptlI | Lgra_1150 | Lgra_0519 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Pentalenene oxygenase. | 0.605 |
Lgra_1150 | tycC_1 | Lgra_1150 | Lgra_0545 | Oxidoreductase, 2OG-Fe(II) oxygenase family; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Non-ribosomal peptide synthase. | 0.692 |
Lgra_1551 | Lgra_0544 | Lgra_1551 | Lgra_0544 | Saframycin Mx1 synthetase B. | Polyketide synthase. | 0.999 |
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