Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0455 | Lgra_1187 | Lgra_0455 | Lgra_1187 | Ankyrin repeats (3 copies). | Transmembrane protein. | 0.435 |
Lgra_0455 | SidM_3 | Lgra_0455 | Lgra_2203 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.759 |
Lgra_0455 | secA_3 | Lgra_0455 | Lgra_1228 | Ankyrin repeats (3 copies). | Coiled-coil protein. | 0.774 |
Lgra_1187 | Lgra_0455 | Lgra_1187 | Lgra_0455 | Transmembrane protein. | Ankyrin repeats (3 copies). | 0.435 |
Lgra_1187 | Lgra_2452 | Lgra_1187 | Lgra_2452 | Transmembrane protein. | Hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | 0.622 |
Lgra_1187 | SidM_3 | Lgra_1187 | Lgra_2203 | Transmembrane protein. | Hypothetical protein. | 0.418 |
Lgra_1187 | pagP | Lgra_1187 | Lgra_1186 | Transmembrane protein. | Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.516 |
Lgra_1187 | secA_3 | Lgra_1187 | Lgra_1228 | Transmembrane protein. | Coiled-coil protein. | 0.445 |
Lgra_1187 | yveA_1 | Lgra_1187 | Lgra_1185 | Transmembrane protein. | Amino acid permease. | 0.404 |
Lgra_2452 | Lgra_1187 | Lgra_2452 | Lgra_1187 | Hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | Transmembrane protein. | 0.622 |
SidM_3 | Lgra_0455 | Lgra_2203 | Lgra_0455 | Hypothetical protein. | Ankyrin repeats (3 copies). | 0.759 |
SidM_3 | Lgra_1187 | Lgra_2203 | Lgra_1187 | Hypothetical protein. | Transmembrane protein. | 0.418 |
SidM_3 | secA_3 | Lgra_2203 | Lgra_1228 | Hypothetical protein. | Coiled-coil protein. | 0.749 |
pagP | Lgra_1187 | Lgra_1186 | Lgra_1187 | Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | Transmembrane protein. | 0.516 |
pagP | yveA_1 | Lgra_1186 | Lgra_1185 | Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | Amino acid permease. | 0.583 |
secA_3 | Lgra_0455 | Lgra_1228 | Lgra_0455 | Coiled-coil protein. | Ankyrin repeats (3 copies). | 0.774 |
secA_3 | Lgra_1187 | Lgra_1228 | Lgra_1187 | Coiled-coil protein. | Transmembrane protein. | 0.445 |
secA_3 | SidM_3 | Lgra_1228 | Lgra_2203 | Coiled-coil protein. | Hypothetical protein. | 0.749 |
yveA_1 | Lgra_1187 | Lgra_1185 | Lgra_1187 | Amino acid permease. | Transmembrane protein. | 0.404 |
yveA_1 | pagP | Lgra_1185 | Lgra_1186 | Amino acid permease. | Antimicrobial peptide resistance and Lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.583 |