STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lepB_2Effector protein B, substrate of the Dot/Icm secretion system. (288 aa)    
Predicted Functional Partners:
bvgS
Sensory box histidine kinase/response regulator.
     
 0.625
arcB_3
Sensory histidine-kinase / response regulator.
     
 0.625
gmr_2
Sensory box/GGDEF domain protein.
     
 0.610
letS
Legionella transmission sensor LetS.
     
 0.590
cyaA_3
Guanylate cyclase.
     
 0.574
ribH1
6,7-dimethyl-8-ribityllumazine synthase; Belongs to the DMRL synthase family.
  
    0.543
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.533
Lgra_1232
6,7-dimethyl-8-ribityllumazine synthase; Belongs to the DMRL synthase family.
  
    0.519
mtfA
Protein MtfA; Belongs to the MtfA family.
       0.513
Lgra_1235
Hypothetical protein.
       0.494
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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