Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lpoALipoprotein. (604 aa)    
Predicted Functional Partners:
mrcA
Putative peptidoglycan synthetase, penicillin-binding protein 1A.
  
 
 
 0.885
Lgra_1296
Hypothetical protein; Belongs to the UPF0102 family.
  
  
 0.858
yraO
DnaA initiator-associating factor for replication initiation.
  
    0.805
osmY_2
Putative lipoprotein.
  
    0.784
Lgra_1299
Hemolysin, lipoprotein.
  
    0.784
yraL
Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.728
Lgra_1123
SCP-2 sterol transfer family protein.
  
    0.709
lolB
Molecular chaperone LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
     0.708
Lgra_0264
Transmembrane protein.
  
     0.663
hemY
Protoporphyrinogen oxidase.
  
     0.644
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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