Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cph2_4Regulatory protein (GGDEF and EAL domains). (550 aa)    
Predicted Functional Partners:
dosC_1
Regulatory protein (GGDEF, PAS, PAC domains).
 
 0.896
ycdT
Diguanylate kinase.
 
 0.885
pleD_2
Regulatory protein (GGDEF domain).
 
 0.878
gmr_3
GGDEF domain-containing sensory box protein.
 
0.852
gmr_4
Hypothetical protein.
 
0.850
spo0F
Hypothetical protein.
  
 0.800
pleD
Sensor histidine kinase.
  
   0.797
ydeH
Regulatory protein (GGDEF, PAS, PAC domains).
  
   0.795
yeaP
Diguanylate kinase.
  
 
   0.786
adrA
Components of sensory transduction system.
 
     0.770
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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