STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_1394Hypothetical protein; Belongs to the UPF0149 family. (191 aa)    
Predicted Functional Partners:
pepP
Proline aminopeptidase P II.
     
 0.839
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase.
       0.823
visC
Oxidoreductase with FAD/NAD(P)-binding domain protein.
       0.823
zapA
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
  
 0.768
Lgra_1123
SCP-2 sterol transfer family protein.
  
     0.671
Lgra_1104
KQDN repeat-containing protein.
  
     0.638
gltB_2
Glutamate synthase; Belongs to the glutamate synthase family.
       0.637
pilZ_1
Type IV pilus assembly PilZ.
  
    0.607
truD
Hydrogenase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
  
     0.550
pilF
Twitching motility protein PilF.
  
     0.541
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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