Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0283 | Lgra_1256 | Lgra_0283 | Lgra_1256 | Phospholipase, patatin family. | Putative secreted esterase. | 0.713 |
Lgra_0283 | Lgra_1429 | Lgra_0283 | Lgra_1429 | Phospholipase, patatin family. | Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.768 |
Lgra_0283 | Lgra_2200 | Lgra_0283 | Lgra_2200 | Phospholipase, patatin family. | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase. | 0.775 |
Lgra_0283 | Lgra_2360 | Lgra_0283 | Lgra_2360 | Phospholipase, patatin family. | Hypothetical protein. | 0.767 |
Lgra_0283 | Lgra_2381 | Lgra_0283 | Lgra_2381 | Phospholipase, patatin family. | Calcium-transporting ATPase. | 0.772 |
Lgra_0283 | Lgra_2787 | Lgra_0283 | Lgra_2787 | Phospholipase, patatin family. | Ankyrin repeat protein. | 0.765 |
Lgra_0283 | bcp | Lgra_0283 | Lgra_2732 | Phospholipase, patatin family. | Acetylpolyamine aminohydrolase. | 0.764 |
Lgra_0283 | kinE | Lgra_0283 | Lgra_0061 | Phospholipase, patatin family. | Sensor histidine kinase. | 0.751 |
Lgra_0283 | pieE_2 | Lgra_0283 | Lgra_3228 | Phospholipase, patatin family. | Substrate of the Dot/Icm secretion system. | 0.770 |
Lgra_0283 | yeeA_1 | Lgra_0283 | Lgra_1538 | Phospholipase, patatin family. | Inner membrane protein. | 0.764 |
Lgra_1256 | Lgra_0283 | Lgra_1256 | Lgra_0283 | Putative secreted esterase. | Phospholipase, patatin family. | 0.713 |
Lgra_1256 | Lgra_1429 | Lgra_1256 | Lgra_1429 | Putative secreted esterase. | Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.794 |
Lgra_1256 | Lgra_2200 | Lgra_1256 | Lgra_2200 | Putative secreted esterase. | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase. | 0.811 |
Lgra_1256 | Lgra_2360 | Lgra_1256 | Lgra_2360 | Putative secreted esterase. | Hypothetical protein. | 0.760 |
Lgra_1256 | Lgra_2381 | Lgra_1256 | Lgra_2381 | Putative secreted esterase. | Calcium-transporting ATPase. | 0.766 |
Lgra_1256 | Lgra_2787 | Lgra_1256 | Lgra_2787 | Putative secreted esterase. | Ankyrin repeat protein. | 0.770 |
Lgra_1256 | bcp | Lgra_1256 | Lgra_2732 | Putative secreted esterase. | Acetylpolyamine aminohydrolase. | 0.751 |
Lgra_1256 | kinE | Lgra_1256 | Lgra_0061 | Putative secreted esterase. | Sensor histidine kinase. | 0.750 |
Lgra_1256 | pieE_2 | Lgra_1256 | Lgra_3228 | Putative secreted esterase. | Substrate of the Dot/Icm secretion system. | 0.765 |
Lgra_1256 | yeeA_1 | Lgra_1256 | Lgra_1538 | Putative secreted esterase. | Inner membrane protein. | 0.731 |
page 1 of 6