Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_1516 | Lgra_1519 | Lgra_1516 | Lgra_1519 | Pyoverdine biosynthesis protein PvcA. | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | 0.831 |
Lgra_1516 | pvcB | Lgra_1516 | Lgra_1517 | Pyoverdine biosynthesis protein PvcA. | Pyoverdine biosynthesis protein PvcB. | 0.976 |
Lgra_1519 | Lgra_1516 | Lgra_1519 | Lgra_1516 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | Pyoverdine biosynthesis protein PvcA. | 0.831 |
Lgra_1519 | Lgra_2195 | Lgra_1519 | Lgra_2195 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | acyl-CoA synthetase. | 0.820 |
Lgra_1519 | accB | Lgra_1519 | Lgra_2771 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.970 |
Lgra_1519 | birA | Lgra_1519 | Lgra_1845 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.878 |
Lgra_1519 | pksJ_1 | Lgra_1519 | Lgra_1874 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | Polyketide synthase, type I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.818 |
Lgra_1519 | pksJ_2 | Lgra_1519 | Lgra_1354 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | Polyketide synthase module; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.840 |
Lgra_1519 | pksM | Lgra_1519 | Lgra_1928 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | Polyketide synthase. | 0.857 |
Lgra_1519 | pvcB | Lgra_1519 | Lgra_1517 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | Pyoverdine biosynthesis protein PvcB. | 0.868 |
Lgra_1519 | ribD | Lgra_1519 | Lgra_1638 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.915 |
Lgra_1519 | tycC_1 | Lgra_1519 | Lgra_0545 | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | Non-ribosomal peptide synthase. | 0.810 |
Lgra_2195 | Lgra_1519 | Lgra_2195 | Lgra_1519 | acyl-CoA synthetase. | Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein. | 0.820 |
Lgra_2195 | accB | Lgra_2195 | Lgra_2771 | acyl-CoA synthetase. | acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.770 |
Lgra_2195 | birA | Lgra_2195 | Lgra_1845 | acyl-CoA synthetase. | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.456 |
Lgra_2195 | pksJ_1 | Lgra_2195 | Lgra_1874 | acyl-CoA synthetase. | Polyketide synthase, type I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.999 |
Lgra_2195 | pksJ_2 | Lgra_2195 | Lgra_1354 | acyl-CoA synthetase. | Polyketide synthase module; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.999 |
Lgra_2195 | pksM | Lgra_2195 | Lgra_1928 | acyl-CoA synthetase. | Polyketide synthase. | 0.999 |
Lgra_2195 | pvcB | Lgra_2195 | Lgra_1517 | acyl-CoA synthetase. | Pyoverdine biosynthesis protein PvcB. | 0.576 |
Lgra_2195 | tycC_1 | Lgra_2195 | Lgra_0545 | acyl-CoA synthetase. | Non-ribosomal peptide synthase. | 0.999 |
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