Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
wzmABC transporter of LPS O-antigen, Wzm. (273 aa)    
Predicted Functional Partners:
tagH
ABC transporter of LPS O-antigen.
 
 0.999
wbbL
Putative glycosyl transferase.
 
  
 0.870
kfoC_3
Glycosyl transferase, family 2.
 
  
 0.765
rbbA
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
    
 0.629
yadG
Transporter subunit: ATP-binding component of ABC superfamily protein.
    
 0.588
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.575
Lgra_1564
FtsX-like permease family protein.
 
     0.544
yadH
Transporter subunit: membrane component of ABC superfamily protein.
    
  0.543
ttgC_2
Multidrug efflux MFS outer membrane protein.
       0.506
macA_2
Hemolysin D.
       0.506
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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