Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoKAlkaline phosphatase. (539 aa)    
Predicted Functional Partners:
udk_2
Uridine kinase.
       0.690
Lgra_1648
Dot/Icm T4SS effector.
       0.660
Lgra_1982
Putative Heparan-alpha-glucosaminide N-acetyltransferase.
  
  
  0.639
egtB
Methyltransferase.
   
   0.513
fabI_1
enoyl-ACP reductase.
       0.505
ptpA
Prolyl tripeptidyl peptidase precursor.
  
     0.496
htpX_2
Protease heat shock protein; Belongs to the peptidase M48B family.
       0.443
Lgra_1677
Putative Acetyltransferase, GNAT family.
  
     0.422
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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