Lgra_1671 protein (Legionella gratiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lgra_1671

Acetyl/propionyl-CoA carboxylase, beta subunit. (535 aa)

Predicted Functional Partners:

mccA

0.999

Lgra_1674

0.990

mvaB

0.962

menB

0.920

yfcX

0.910

bacD_2

0.880

Lgra_1672

0.839

atoB

0.801

acsA

0.769

fadB

0.736

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgra_1671	Lgra_1672	Lgra_1671	Lgra_1672	Acetyl/propionyl-CoA carboxylase, beta subunit.	Hypothetical protein.	0.839
Lgra_1671	Lgra_1674	Lgra_1671	Lgra_1674	Acetyl/propionyl-CoA carboxylase, beta subunit.	acyl-CoA dehydrogenase.	0.990
Lgra_1671	acsA	Lgra_1671	Lgra_1667	Acetyl/propionyl-CoA carboxylase, beta subunit.	acetyl-CoA synthetase.	0.769
Lgra_1671	atoB	Lgra_1671	Lgra_1673	Acetyl/propionyl-CoA carboxylase, beta subunit.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.801
Lgra_1671	bacD_2	Lgra_1671	Lgra_0922	Acetyl/propionyl-CoA carboxylase, beta subunit.	Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein.	0.880
Lgra_1671	fadB	Lgra_1671	Lgra_2557	Acetyl/propionyl-CoA carboxylase, beta subunit.	3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.736
Lgra_1671	mccA	Lgra_1671	Lgra_1669	Acetyl/propionyl-CoA carboxylase, beta subunit.	Acyl CoA carboxylase subunit alpha.	0.999
Lgra_1671	menB	Lgra_1671	Lgra_1670	Acetyl/propionyl-CoA carboxylase, beta subunit.	enoyl-CoA hydratase.	0.920
Lgra_1671	mvaB	Lgra_1671	Lgra_1668	Acetyl/propionyl-CoA carboxylase, beta subunit.	hydroxymethylglutaryl-CoA lyase.	0.962
Lgra_1671	yfcX	Lgra_1671	Lgra_0258	Acetyl/propionyl-CoA carboxylase, beta subunit.	Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.910
Lgra_1672	Lgra_1671	Lgra_1672	Lgra_1671	Hypothetical protein.	Acetyl/propionyl-CoA carboxylase, beta subunit.	0.839
Lgra_1672	Lgra_1674	Lgra_1672	Lgra_1674	Hypothetical protein.	acyl-CoA dehydrogenase.	0.665
Lgra_1672	acsA	Lgra_1672	Lgra_1667	Hypothetical protein.	acetyl-CoA synthetase.	0.622
Lgra_1672	atoB	Lgra_1672	Lgra_1673	Hypothetical protein.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.670
Lgra_1672	mccA	Lgra_1672	Lgra_1669	Hypothetical protein.	Acyl CoA carboxylase subunit alpha.	0.825
Lgra_1672	menB	Lgra_1672	Lgra_1670	Hypothetical protein.	enoyl-CoA hydratase.	0.758
Lgra_1672	mvaB	Lgra_1672	Lgra_1668	Hypothetical protein.	hydroxymethylglutaryl-CoA lyase.	0.761
Lgra_1674	Lgra_1671	Lgra_1674	Lgra_1671	acyl-CoA dehydrogenase.	Acetyl/propionyl-CoA carboxylase, beta subunit.	0.990
Lgra_1674	Lgra_1672	Lgra_1674	Lgra_1672	acyl-CoA dehydrogenase.	Hypothetical protein.	0.665
Lgra_1674	acsA	Lgra_1674	Lgra_1667	acyl-CoA dehydrogenase.	acetyl-CoA synthetase.	0.677