Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_1731Hypothetical protein. (340 aa)    
Predicted Functional Partners:
Lgra_0894
Ubiquitin conjugation factor E4 family domain protein (U-box).
  
     0.764
Lgra_2006
Ankyrin repeat protein.
  
     0.753
Lgra_2577
Phosphoesterase.
  
     0.735
Lgra_2847
Protein kinase domain protein.
  
     0.733
Lgra_1167
Hypothetical protein.
  
     0.687
Lgra_1339
Hypothetical protein.
  
     0.664
Lgra_1145
Hypothetical protein.
  
     0.636
Lgra_2868
Hypothetical protein.
  
     0.602
Lgra_1813
Acyl-CoA N-acyltransferase.
  
     0.595
Lgra_3348
Beta-lactam binding protein AmpH.
  
     0.575
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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