Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0085 | Lgra_1806 | Lgra_0085 | Lgra_1806 | Hypothetical protein. | Hypothetical protein. | 0.581 |
Lgra_0085 | cpsB | Lgra_0085 | Lgra_1071 | Hypothetical protein. | Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.476 |
Lgra_0085 | metG | Lgra_0085 | Lgra_1074 | Hypothetical protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.530 |
Lgra_0867 | Lgra_1806 | Lgra_0867 | Lgra_1806 | Intracellular protease/amidase. | Hypothetical protein. | 0.572 |
Lgra_1806 | Lgra_0085 | Lgra_1806 | Lgra_0085 | Hypothetical protein. | Hypothetical protein. | 0.581 |
Lgra_1806 | Lgra_0867 | Lgra_1806 | Lgra_0867 | Hypothetical protein. | Intracellular protease/amidase. | 0.572 |
Lgra_1806 | Lgra_2246 | Lgra_1806 | Lgra_2246 | Hypothetical protein. | Phytanoyl-CoA dioxygenase. | 0.544 |
Lgra_1806 | Lgra_2657 | Lgra_1806 | Lgra_2657 | Hypothetical protein. | Carboxymuconolactone decarboxylase family transporter; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | 0.656 |
Lgra_1806 | Lgra_3156 | Lgra_1806 | Lgra_3156 | Hypothetical protein. | phytanoyl-CoA dioxygenase. | 0.544 |
Lgra_1806 | cpsB | Lgra_1806 | Lgra_1071 | Hypothetical protein. | Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.620 |
Lgra_1806 | metG | Lgra_1806 | Lgra_1074 | Hypothetical protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.660 |
Lgra_1806 | nadD | Lgra_1806 | Lgra_2564 | Hypothetical protein. | Nicotinate-nucleotide adenylyltransferase NadD; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.507 |
Lgra_1806 | pheA_2 | Lgra_1806 | Lgra_2153 | Hypothetical protein. | Chorismate mutase. | 0.651 |
Lgra_1806 | purB | Lgra_1806 | Lgra_0499 | Hypothetical protein. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.648 |
Lgra_2246 | Lgra_1806 | Lgra_2246 | Lgra_1806 | Phytanoyl-CoA dioxygenase. | Hypothetical protein. | 0.544 |
Lgra_2246 | Lgra_3156 | Lgra_2246 | Lgra_3156 | Phytanoyl-CoA dioxygenase. | phytanoyl-CoA dioxygenase. | 0.530 |
Lgra_2246 | cpsB | Lgra_2246 | Lgra_1071 | Phytanoyl-CoA dioxygenase. | Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.428 |
Lgra_2657 | Lgra_1806 | Lgra_2657 | Lgra_1806 | Carboxymuconolactone decarboxylase family transporter; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Hypothetical protein. | 0.656 |
Lgra_2657 | purB | Lgra_2657 | Lgra_0499 | Carboxymuconolactone decarboxylase family transporter; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.742 |
Lgra_3156 | Lgra_1806 | Lgra_3156 | Lgra_1806 | phytanoyl-CoA dioxygenase. | Hypothetical protein. | 0.544 |
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