Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_1896 | Lgra_1897 | Lgra_1896 | Lgra_1897 | Glyoxalase/Bleomycin resistance family protein. | Hypothetical protein. | 0.793 |
Lgra_1896 | dedA | Lgra_1896 | Lgra_1898 | Glyoxalase/Bleomycin resistance family protein. | Transmembrane protein DedA family protein. | 0.574 |
Lgra_1897 | Lgra_1896 | Lgra_1897 | Lgra_1896 | Hypothetical protein. | Glyoxalase/Bleomycin resistance family protein. | 0.793 |
Lgra_1897 | dedA | Lgra_1897 | Lgra_1898 | Hypothetical protein. | Transmembrane protein DedA family protein. | 0.554 |
dedA | Lgra_1896 | Lgra_1898 | Lgra_1896 | Transmembrane protein DedA family protein. | Glyoxalase/Bleomycin resistance family protein. | 0.574 |
dedA | Lgra_1897 | Lgra_1898 | Lgra_1897 | Transmembrane protein DedA family protein. | Hypothetical protein. | 0.554 |
dedA | thiDE | Lgra_1898 | Lgra_2988 | Transmembrane protein DedA family protein. | Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.407 |
thiDE | dedA | Lgra_2988 | Lgra_1898 | Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | Transmembrane protein DedA family protein. | 0.407 |