Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_1960 | Lgra_1961 | Lgra_1960 | Lgra_1961 | Hypothetical protein. | ABC transporter permease. | 0.400 |
Lgra_1961 | Lgra_1960 | Lgra_1961 | Lgra_1960 | ABC transporter permease. | Hypothetical protein. | 0.400 |
Lgra_1961 | Lgra_1962 | Lgra_1961 | Lgra_1962 | ABC transporter permease. | Acyltransferase. | 0.763 |
Lgra_1961 | Lgra_1964 | Lgra_1961 | Lgra_1964 | ABC transporter permease. | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.511 |
Lgra_1961 | gatA_1 | Lgra_1961 | Lgra_1963 | ABC transporter permease. | Amidase. | 0.756 |
Lgra_1962 | Lgra_1961 | Lgra_1962 | Lgra_1961 | Acyltransferase. | ABC transporter permease. | 0.763 |
Lgra_1962 | Lgra_1964 | Lgra_1962 | Lgra_1964 | Acyltransferase. | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.484 |
Lgra_1962 | gatA_1 | Lgra_1962 | Lgra_1963 | Acyltransferase. | Amidase. | 0.762 |
Lgra_1964 | Lgra_1961 | Lgra_1964 | Lgra_1961 | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | ABC transporter permease. | 0.511 |
Lgra_1964 | Lgra_1962 | Lgra_1964 | Lgra_1962 | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | Acyltransferase. | 0.484 |
Lgra_1964 | gatA_1 | Lgra_1964 | Lgra_1963 | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | Amidase. | 0.513 |
gatA_1 | Lgra_1961 | Lgra_1963 | Lgra_1961 | Amidase. | ABC transporter permease. | 0.756 |
gatA_1 | Lgra_1962 | Lgra_1963 | Lgra_1962 | Amidase. | Acyltransferase. | 0.762 |
gatA_1 | Lgra_1964 | Lgra_1963 | Lgra_1964 | Amidase. | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.513 |