Lgra_1982 protein (Legionella gratiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lgra_1982

Putative Heparan-alpha-glucosaminide N-acetyltransferase. (372 aa)

Predicted Functional Partners:

arcB_1

0.776

phoK

0.639

ptpA

0.629

Lgra_1981

0.625

Lgra_1980

0.485

aspS

0.461

Lgra_1634

0.455

mutH

0.454

ybbD_1

0.443

Lgra_1978

0.425

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgra_1634	Lgra_1982	Lgra_1634	Lgra_1982	Hypothetical protein.	Putative Heparan-alpha-glucosaminide N-acetyltransferase.	0.455
Lgra_1978	Lgra_1980	Lgra_1978	Lgra_1980	Mechanosensitive ion channel MscS.	Transmembrane protein.	0.833
Lgra_1978	Lgra_1981	Lgra_1978	Lgra_1981	Mechanosensitive ion channel MscS.	Zinc ribbon domain protein.	0.804
Lgra_1978	Lgra_1982	Lgra_1978	Lgra_1982	Mechanosensitive ion channel MscS.	Putative Heparan-alpha-glucosaminide N-acetyltransferase.	0.425
Lgra_1978	aspS	Lgra_1978	Lgra_1979	Mechanosensitive ion channel MscS.	aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	0.842
Lgra_1978	mutH	Lgra_1978	Lgra_1977	Mechanosensitive ion channel MscS.	DNA mismatch repair protein mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.	0.856
Lgra_1980	Lgra_1978	Lgra_1980	Lgra_1978	Transmembrane protein.	Mechanosensitive ion channel MscS.	0.833
Lgra_1980	Lgra_1981	Lgra_1980	Lgra_1981	Transmembrane protein.	Zinc ribbon domain protein.	0.842
Lgra_1980	Lgra_1982	Lgra_1980	Lgra_1982	Transmembrane protein.	Putative Heparan-alpha-glucosaminide N-acetyltransferase.	0.485
Lgra_1980	arcB_1	Lgra_1980	Lgra_1983	Transmembrane protein.	Response regulator.	0.431
Lgra_1980	aspS	Lgra_1980	Lgra_1979	Transmembrane protein.	aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	0.804
Lgra_1980	mutH	Lgra_1980	Lgra_1977	Transmembrane protein.	DNA mismatch repair protein mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.	0.804
Lgra_1981	Lgra_1978	Lgra_1981	Lgra_1978	Zinc ribbon domain protein.	Mechanosensitive ion channel MscS.	0.804
Lgra_1981	Lgra_1980	Lgra_1981	Lgra_1980	Zinc ribbon domain protein.	Transmembrane protein.	0.842
Lgra_1981	Lgra_1982	Lgra_1981	Lgra_1982	Zinc ribbon domain protein.	Putative Heparan-alpha-glucosaminide N-acetyltransferase.	0.625
Lgra_1981	arcB_1	Lgra_1981	Lgra_1983	Zinc ribbon domain protein.	Response regulator.	0.438
Lgra_1981	aspS	Lgra_1981	Lgra_1979	Zinc ribbon domain protein.	aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	0.804
Lgra_1981	mutH	Lgra_1981	Lgra_1977	Zinc ribbon domain protein.	DNA mismatch repair protein mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.	0.804
Lgra_1982	Lgra_1634	Lgra_1982	Lgra_1634	Putative Heparan-alpha-glucosaminide N-acetyltransferase.	Hypothetical protein.	0.455
Lgra_1982	Lgra_1978	Lgra_1982	Lgra_1978	Putative Heparan-alpha-glucosaminide N-acetyltransferase.	Mechanosensitive ion channel MscS.	0.425