STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_2006Ankyrin repeat protein. (346 aa)    
Predicted Functional Partners:
Lgra_2421
Ras family protein.
    
  0.849
Lgra_2847
Protein kinase domain protein.
  
     0.764
Lgra_1731
Hypothetical protein.
  
     0.753
Lgra_0894
Ubiquitin conjugation factor E4 family domain protein (U-box).
  
     0.729
Lgra_2868
Hypothetical protein.
  
     0.696
Lgra_2577
Phosphoesterase.
  
 
   0.670
Lgra_3348
Beta-lactam binding protein AmpH.
  
     0.670
amyA
Alpha-amylase.
  
     0.620
hipB
Putative DNA-binding transcriptional regulator.
  
     0.584
Lgra_3269
Alpha-amylase.
  
     0.581
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.