Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Lgra_2064Methyl-transferase. (245 aa)    
Predicted Functional Partners:
Lgra_2544
Transmembrane protein.
  
     0.667
Lgra_2195
acyl-CoA synthetase.
    
 0.650
Lgra_1119
Hypothetical protein.
  
     0.640
rlpB
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.637
Lgra_1551
Saframycin Mx1 synthetase B.
  
 
 0.632
Lgra_0544
Polyketide synthase.
     
 0.612
gshA
Glutamate--cysteine ligase.
  
     0.612
tycC_1
Non-ribosomal peptide synthase.
     
 0.595
pksJ_2
Polyketide synthase module; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.595
pksJ_1
Polyketide synthase, type I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.595
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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