Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_2088 | Lgra_2089 | Lgra_2088 | Lgra_2089 | Hypothetical protein. | Transmembrane protein. | 0.741 |
Lgra_2088 | rpiB | Lgra_2088 | Lgra_2087 | Hypothetical protein. | Ribose/galactose isomerase. | 0.693 |
Lgra_2088 | ydiA | Lgra_2088 | Lgra_2090 | Hypothetical protein. | Putative phosphotransferase; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation. | 0.556 |
Lgra_2089 | Lgra_2088 | Lgra_2089 | Lgra_2088 | Transmembrane protein. | Hypothetical protein. | 0.741 |
Lgra_2089 | rpiB | Lgra_2089 | Lgra_2087 | Transmembrane protein. | Ribose/galactose isomerase. | 0.643 |
Lgra_2089 | ydiA | Lgra_2089 | Lgra_2090 | Transmembrane protein. | Putative phosphotransferase; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation. | 0.590 |
rpiB | Lgra_2088 | Lgra_2087 | Lgra_2088 | Ribose/galactose isomerase. | Hypothetical protein. | 0.693 |
rpiB | Lgra_2089 | Lgra_2087 | Lgra_2089 | Ribose/galactose isomerase. | Transmembrane protein. | 0.643 |
rpiB | ydiA | Lgra_2087 | Lgra_2090 | Ribose/galactose isomerase. | Putative phosphotransferase; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation. | 0.470 |
ydiA | Lgra_2088 | Lgra_2090 | Lgra_2088 | Putative phosphotransferase; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation. | Hypothetical protein. | 0.556 |
ydiA | Lgra_2089 | Lgra_2090 | Lgra_2089 | Putative phosphotransferase; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation. | Transmembrane protein. | 0.590 |
ydiA | rpiB | Lgra_2090 | Lgra_2087 | Putative phosphotransferase; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation. | Ribose/galactose isomerase. | 0.470 |