Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilFTwitching motility protein PilF. (248 aa)    
Predicted Functional Partners:
rodZ
DNA-binding protein.
  
    0.865
hisS
histidyl-tRNA synthetase.
  
    0.843
Lgra_2111
Transmembrane protein.
 
     0.812
pilP
Tfp pilus assembly protein PilP.
  
   
 0.771
pilN
Tfp pilus assembly protein PilN.
  
   
 0.765
pilO
Tfp pilus assembly protein PilO.
  
   
 0.736
Lgra_3232
Hypothetical protein.
  
     0.707
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
   
 0.700
pilM
Tfp pilus assembly protein, ATPase PilM.
  
   
 0.624
pilE_1
Type-IV pilin.
  
   
 0.621
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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