STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ygfZGlycine cleavage T protein. (333 aa)    
Predicted Functional Partners:
yadR
Iron-sulfur cluster assembly accessory protein family protein; Required for insertion of 4Fe-4S clusters for at least IspG.
 
 
 
 0.846
cptB
Antitoxin CptB.
 
     0.814
sufA
Fe-S cluster assembly protein; Belongs to the HesB/IscA family.
   
 
 0.751
Lgra_2140
Hypothetical protein.
       0.727
Lgra_2952
DamX-related protein.
  
     0.669
rpoE
Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.
       0.659
Lgra_0455
Ankyrin repeats (3 copies).
  
     0.653
secA_3
Coiled-coil protein.
  
     0.621
iraA
Small-molecule methyltransferase IraA.
  
     0.615
Lgra_2787
Ankyrin repeat protein.
 
     0.610
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.