Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_1931 | ymfC | Lgra_1931 | Lgra_2162 | Endonuclease/Exonuclease/phosphatase family protein. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.637 |
Lgra_2161 | ymfC | Lgra_2161 | Lgra_2162 | Hypothetical protein. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.427 |
der | kcy | Lgra_2109 | Lgra_0277 | GTPase involved in ribosome synthesis and maintenance; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Cytidylate kinase. | 0.973 |
der | scpB | Lgra_2109 | Lgra_0305 | GTPase involved in ribosome synthesis and maintenance; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.657 |
der | ycbY | Lgra_2109 | Lgra_1189 | GTPase involved in ribosome synthesis and maintenance; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.406 |
der | ymfC | Lgra_2109 | Lgra_2162 | GTPase involved in ribosome synthesis and maintenance; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.736 |
exoA | xthA | Lgra_2236 | Lgra_2237 | Exodeoxyribonuclease. | Exodeoxyribonuclease III. | 0.929 |
exoA | ymfC | Lgra_2236 | Lgra_2162 | Exodeoxyribonuclease. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.637 |
kcy | der | Lgra_0277 | Lgra_2109 | Cytidylate kinase. | GTPase involved in ribosome synthesis and maintenance; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.973 |
kcy | scpB | Lgra_0277 | Lgra_0305 | Cytidylate kinase. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.751 |
kcy | ymfC | Lgra_0277 | Lgra_2162 | Cytidylate kinase. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.686 |
scpB | der | Lgra_0305 | Lgra_2109 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | GTPase involved in ribosome synthesis and maintenance; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.657 |
scpB | kcy | Lgra_0305 | Lgra_0277 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | Cytidylate kinase. | 0.751 |
scpB | ymfC | Lgra_0305 | Lgra_2162 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.610 |
xthA | exoA | Lgra_2237 | Lgra_2236 | Exodeoxyribonuclease III. | Exodeoxyribonuclease. | 0.929 |
xthA | ymfC | Lgra_2237 | Lgra_2162 | Exodeoxyribonuclease III. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.637 |
ycbY | der | Lgra_1189 | Lgra_2109 | Methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | GTPase involved in ribosome synthesis and maintenance; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.406 |
ycbY | ymfC | Lgra_1189 | Lgra_2162 | Methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.752 |
ymfC | Lgra_1931 | Lgra_2162 | Lgra_1931 | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Endonuclease/Exonuclease/phosphatase family protein. | 0.637 |
ymfC | Lgra_2161 | Lgra_2162 | Lgra_2161 | 23S rRNA pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.427 |
page 1 of 2