Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_2051 | argF | Lgra_2051 | Lgra_0552 | Hydrolase. | Ornithine carbamoyltransferase. | 0.426 |
Lgra_2051 | asg | Lgra_2051 | Lgra_1081 | Hydrolase. | L-asparaginase I. | 0.602 |
Lgra_2051 | ddc | Lgra_2051 | Lgra_2418 | Hydrolase. | Pyridoxal-dependent decarboxylase. | 0.486 |
Lgra_2051 | hutG | Lgra_2051 | Lgra_2184 | Hydrolase. | Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. | 0.617 |
Lgra_2051 | iaaA | Lgra_2051 | Lgra_2268 | Hydrolase. | Isoaspartyl dipeptidase with L-asparaginase activity. | 0.500 |
Lgra_2051 | lysAC | Lgra_2051 | Lgra_1694 | Hydrolase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.528 |
Lgra_2051 | purA | Lgra_2051 | Lgra_2791 | Hydrolase. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.567 |
Lgra_2265 | cphA_2 | Lgra_2265 | Lgra_2266 | PRC-barrel domain protein. | Cyanophycin synthetase. | 0.466 |
Lgra_2265 | cphB | Lgra_2265 | Lgra_2267 | PRC-barrel domain protein. | Cyanophycinase; Belongs to the peptidase S51 family. | 0.476 |
Lgra_2265 | iaaA | Lgra_2265 | Lgra_2268 | PRC-barrel domain protein. | Isoaspartyl dipeptidase with L-asparaginase activity. | 0.465 |
argF | Lgra_2051 | Lgra_0552 | Lgra_2051 | Ornithine carbamoyltransferase. | Hydrolase. | 0.426 |
argF | asg | Lgra_0552 | Lgra_1081 | Ornithine carbamoyltransferase. | L-asparaginase I. | 0.524 |
argF | cphA_2 | Lgra_0552 | Lgra_2266 | Ornithine carbamoyltransferase. | Cyanophycin synthetase. | 0.763 |
argF | ddc | Lgra_0552 | Lgra_2418 | Ornithine carbamoyltransferase. | Pyridoxal-dependent decarboxylase. | 0.656 |
argF | hutG | Lgra_0552 | Lgra_2184 | Ornithine carbamoyltransferase. | Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. | 0.779 |
argF | iaaA | Lgra_0552 | Lgra_2268 | Ornithine carbamoyltransferase. | Isoaspartyl dipeptidase with L-asparaginase activity. | 0.458 |
argF | lysAC | Lgra_0552 | Lgra_1694 | Ornithine carbamoyltransferase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.791 |
argF | purA | Lgra_0552 | Lgra_2791 | Ornithine carbamoyltransferase. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.807 |
asg | Lgra_2051 | Lgra_1081 | Lgra_2051 | L-asparaginase I. | Hydrolase. | 0.602 |
asg | argF | Lgra_1081 | Lgra_0552 | L-asparaginase I. | Ornithine carbamoyltransferase. | 0.524 |
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